Rampin O, Saint Albin Deliot A, Ouali C, Burguet J, Gry E, Champeil Potokar G, Jérôme N, Davidenko O, Darcel N, Bombail V, Andrey P, Denis I (2022). Dopamine Modulates the Processing of Food Odour in the Ventral Striatum. Biomedicines, 10(5):1126. PubMed | DOI

Arpòn J, Sakai K, Gaudin V, Andrey P (2021). Spatial modeling of biological patterns shows multiscale organization of Arabidopsis thaliana heterochromatin. Sci Rep, 11(1):323. PubMed | DOI

Haddad-Tovolli R, Altirriba J, Obri A, Sanchez EE, Chivite I, Mila-Guasch M, Ramirez S, Gomez-Valades AG, Pozo M, Burguet J, Velloso LA, Claret M (2020). Pro-opiomelanocortin (POMC) neuron translatome signatures underlying obesogenic gestational malprogramming in mice. Mol Metab, 36:100963. PubMed | DOI

Farmer DGS, Pracejus N, Dempsey B, Turner A, Bokiniec P, Paton JFR, Pickering AE, Burguet J, Andrey P, Goodchild AK, Mcallen RM, Mcmullan S (2019). On the presence and functional significance of sympathetic premotor neurons with collateralized spinal axons in the rat. J Physiol, 597:3407-3423. PubMed | DOI

Moukhtar J, Trubuil A, Belcram K, Legland D, Khadir Z, Urbain A, Palauqui JC, Andrey P (2019). Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos. PLoS Comput Biol, 15:e1006771. PubMed | DOI

Arganda-Carreras I, Manoliu T, Mazuras N, Schulze F, Iglesias JE, Buhler K, Jenett A, Rouyer F, Andrey P (2018). A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain. Front Neuroinform, 12:13. PubMed | DOI

Arpòn J, Gaudin V, Andrey P (2018). A Method for Testing Random Spatial Models on Nuclear Object Distributions. Methods Mol Biol, 1675:493-507. PubMed | DOI

Fernandes JB, Duhamel M, Seguela-Arnaud M, Froger N, Girard C, Choinard S, Solier V, De Winne N, De Jaeger G, Gevaert K, Andrey P, Grelon M, Guerois R, Kumar R, Mercier R (2018). FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination. PLoS Genet, 14:e1007317. PubMed | DOI

Serra L, Arnaud N, Selka F, Rechenmann C, Andrey P, Laufs P (2018). Heterogeneity and its multiscale integration in plant morphogenesis. Curr Opin Plant Biol, 46:18-24. PubMed | DOI

Arganda-Carreras I, Andrey P (2017). Designing Image Analysis Pipelines in Light Microscopy: A Rational Approach. Methods Mol Biol, 1563:185-207. PubMed | DOI

Chehensse C, Facchinetti P, Bahrami S, Andrey P, Soler JM, Chretien F, Bernabe J, Clement P, Denys P, Giuliano F (2017). Human spinal ejaculation generator. Ann Neurol, 81:35-45. PubMed | DOI

Schaefer E, Belcram K, Uyttewaal M, Duroc Y, Goussot M, Legland D, Laruelle E, De Tauzia-Moreau ML, Pastuglia M, Bouchez D (2017). The preprophase band of microtubules controls the robustness of division orientation in plants. Science, 356:186-189. PubMed | DOI

Bastien R, Legland D, Martin M, Fregosi L, Peaucelle A, Douady S, Moulia B, Höfte H (2016). KymoRod: a method for automated kinematic analysis of rod-shaped plant organs. Plant J, 88:468-475. PubMed | DOI

Biot E, Cortizo M, Burguet J, Kiss A, Oughou M, Maugarny-Calès A, Goncalves B, Adroher B, Andrey P, Boudaoud A, Laufs P (2016). Multiscale quantification of morphodynamics: MorphoLeaf software for 2D shape analysis. Development, 143:3417-3428. PubMed | DOI

Biot E, Crowell E, Burguet J, Höfte H, Vernhettes S, Andrey P (2016). Strategy and software for the statistical spatial analysis of 3D intracellular distributions. Plant J, 87:230-242. PubMed | DOI

Legland D, Arganda-Carreras I, Andrey P (2016). MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ. Bioinformatics, 32:3532-3534. PubMed | DOI

Molitor AM, Latrasse D, Zytnicki M, Andrey P, Houba-Herin N, Hachet M, Battail C, Del Prete S, Alberti A, Quesneville H, Gaudin V (2016). The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes. Plant Cell, 28:2197-2211. PubMed | DOI

Poulet A, Arganda-Carreras I, Legland D, Probst AV, Andrey P, Tatout C (2015). NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei. Bioinformatics, 31:1144-1146. PubMed | DOI

Silva JVC, Legland D, Cauty C, Kolotuev I, Floury J (2015). Characterization of the microstructure of dairy systems using automated image analysis. Food Hydrocolloids, 44:360-371. PubMed | DOI

Burguet J, Andrey P (2014). Statistical comparison of spatial point patterns in biological imaging. PLoS One, 9:e87759. PubMed | DOI

Del Prete S, Arpòn J, Sakai K, Andrey P, Gaudin V (2014). Nuclear architecture and chromatin dynamics in interphase nuclei of Arabidopsis thaliana. Cytogenet Genome Res, 143:28-50. PubMed | DOI

Gul-Mohammed J, Arganda-Carreras I, Andrey P, Galy V, Boudier T (2014). A generic classification-based method for segmentation of nuclei in 3D images of early embryos. BMC Bioinformatics, 15:9. PubMed | DOI

Legland D, Devaux MF, Guillon F (2014). Statistical mapping of maize bundle intensity at the stem scale using spatial normalisation of replicated images. PLoS One, 9:e90673. PubMed | DOI

Miart F, Desprez T, Biot E, Morin H, Belcram K, Höfte H, Gonneau M, Vernhettes S (2014). Spatio-temporal analysis of cellulose synthesis during cell plate formation in Arabidopsis. Plant J, 77:71-84. PubMed | DOI

Vain T, Crowell EF, Timpano H, Biot E, Desprez T, Mansoori N, Trindade LM, Pagant S, Robert S, Höfte H, Gonneau M, Vernhettes S (2014). The Cellulase KORRIGAN Is Part of the Cellulose Synthase Complex. Plant Physiol, 165:1521-1532. PubMed | DOI

Ernoult-Lange M, Baconnais S, Harper M, Minshall N, Souquere S, Boudier T, Benard M, Andrey P, Pierron G, Kress M, Standart N, Le Cam E, Weil D (2012). Multiple binding of repressed mRNAs by the P-body protein Rck/p54. RNA, 18:1702-1715. PubMed | DOI

Andrey P, Kieu K, Kress C, Lehmann G, Tirichine L, Liu Z, Biot E, Adenot PG, Hue-Beauvais C, Houba-Herin N, Duranthon V, Devinoy E, Beaujean N, Gaudin V, Maurin Y, Debey P (2010). Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei. PLoS Comput Biol, 6:e1000853. PubMed | DOI

Simon A, Biot E (2010). ANAIS: analysis of NimbleGen arrays interface. Bioinformatics, 26:2468-2469. PubMed | DOI

Gaudin V, Andrey P, Devinoy E, Kress C, Kieu K, Beaujean N, Maurin Y, Debey P (2009). Modeling the 3D functional architecture of the nucleus in animal and plant kingdoms. C R Biol, 332:937-946. PubMed | DOI

Tirichine L, Andrey P, Biot E, Maurin Y, Gaudin V (2009). 3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei. Plant Methods, 5:11. PubMed | DOI