Biomass, Environment, Adaptation and Metabolism

Weller JL, Liew LC, Hecht VF, Rajandran V, Laurie RE, Ridge S, Wenden B, Vander Schoor JK, Jaminon O, Blassiau C, Dalmais M, Rameau C, Bendahmane A, Macknight RC, Lejeune-Henaut I (2012). A conserved molecular basis for photoperiod adaptation in two temperate legumes. Proc Natl Acad Sci U S A, 109:21158-21163. PubMed | DOI

Zhuang LL, Ambrose M, Rameau C, Weng L, Yang J, Hu XH, Luo D, Li X (2012). LATHYROIDES, encoding a WUSCHEL-related Homeobox1 transcription factor, controls organ lateral growth, and regulates tendril and dorsal petal identities in garden pea (Pisum sativum L.). Mol Plant, 5:1333-1345. PubMed | DOI

Acevedo F, Rubilar M, Shene C, Navarrete P, Romero F, Rabert C, Jolivet P, Valot B, Chardot T (2012). Seed oil bodies from Gevuina avellana and Madia sativa. J Agric Food Chem, 60:6994-7004. PubMed | DOI

Beopoulos A, Haddouche R, Kabran P, Dulermo T, Chardot T, Nicaud JM (2012). Identification and characterization of DGA2, an acyltransferase of the DGAT1 acyl-CoA:diacylglycerol acyltransferase family in the oleaginous yeast Yarrowia lipolytica. New insights into the storage lipid metabolism of oleaginous yeasts. Appl Microbiol Biotechnol, 93:1523-1537. PubMed | DOI

Jasinski S, Lécureuil A, Miquel M, Loudet O, Raffaele S, Froissard M, Guerche P (2012). Natural variation in seed very long chain fatty acid content is controlled by a new isoform of KCS18 in Arabidopsis thaliana. PLoS One, 7:e49261. PubMed | DOI

Mameri H, Bouchez I, Pecquet C, Raison-Peyron N, Choudat D, Chabane H, Kerre S, Denery-Papini S, Gohon Y, Briozzo P, Lauriere M, Snegaroff J (2012). A recombinant omega-gliadin-like D-type glutenin and an alpha-gliadin from wheat (Triticum aestivum): two immunoglobulin E binding proteins, useful for the diagnosis of wheat-dependent allergies. J Agric Food Chem, 60:8059-8068. PubMed | DOI

Mameri H, Denery-Papini S, Pietri M, Tranquet O, Larre C, Drouet M, Paty E, Jonathan AM, Beaudouin E, Moneret-Vautrin DA, Moreau T, Briozzo P, Gaudin JC (2012). Molecular and immunological characterization of wheat Serpin (Tri a 33). Mol Nutr Food Res, 56:1874-1883. PubMed | DOI

Mameri H, Gaudin J, Pietri M, Tranquet O, Larre C, Drouet M, Paty E, Jonathan A, Moneret-Vautrin D, Briozzo P, Denery-Papini S (2012). Serin Protease Inhibitors (Serpins) are wheat allergens containing mainly conformational epitopes. Allergy, 67:602-602. PubMed | DOI

Mameri H, Snegaroff J, Gohon Y, Pecquet C, Choudat D, Raison-Peyron N, Denery-Papini S, Wien F, Briozzo P (2012). Immunoglobulin-E reactivity and structural analysis of wheat low-molecular-weight glutenin subunits and their repetitive and nonrepetitive halves. J Agric Food Chem, 60:7538-7547. PubMed | DOI

Amiour N, Imbaud S, Clément G, Agier N, Zivy M, Valot B, Balliau T, Armengaud P, Quilleré I, Canas R, Tercet-Laforgue T, Hirel B (2012). The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize. J Exp Bot, 63:5017-5033. PubMed | DOI

Cañas RA, Quilleré I, Gallais A, Hirel B (2012). Can genetic variability for nitrogen metabolism in the developing ear of maize be exploited to improve yield?. New Phytol, 194:440-452. PubMed | DOI

Fontaine JX, Terce-Laforgue T, Armengaud P, Clément G, Renou JP, Pelletier S, Catterou M, Azzopardi M, Gibon Y, Lea PJ, Hirel B, Dubois F (2012). Characterization of a NADH-dependent glutamate dehydrogenase mutant of Arabidopsis demonstrates the key role of this enzyme in root carbon and nitrogen metabolism. Plant Cell, 24:4044-4065. PubMed | DOI

To A, Joubes J, Barthole G, Lécureuil A, Scagnelli A, Jasinski S, Lepiniec L, Baud S (2012). WRINKLED transcription factors orchestrate tissue-specific regulation of fatty acid biosynthesis in Arabidopsis. Plant Cell, 24:5007-5023. PubMed | DOI

Dechorgnat J, Patrit O, Krapp A, Fagard M, Daniel-Vedele F (2012). Characterization of the Nrt2.6 gene in Arabidopsis thaliana: a link with plant response to biotic and abiotic stress. PLoS One, 7:e42491. PubMed | DOI

Ikram S, Bedu M, Daniel-Vedele F, Chaillou S, Chardon F (2012). Natural variation of Arabidopsis response to nitrogen availability. J Exp Bot, 63:91-105. PubMed | DOI

Kiba T, Feria-Bourrellier AB, Lafouge F, Lezhneva L, Boutet-Mercey S, Orsel M, Bréhaut V, Miller A, Daniel-Vedele F, Sakakibara H, Krapp A (2012). The Arabidopsis nitrate transporter NRT2.4 plays a double role in roots and shoots of nitrogen-starved plants. Plant Cell, 24:245-258. PubMed | DOI

Moreau M, Azzopardi M, Clément G, Dobrenel T, Marchive C, Renne C, Martin-Magniette ML, Taconnat L, Renou JP, Robaglia C, Meyer C (2012). Mutations in the Arabidopsis homolog of LST8/GbetaL, a partner of the target of Rapamycin kinase, impair plant growth, flowering, and metabolic adaptation to long days. Plant Cell, 24:463-481. PubMed | DOI

Pribat A, Sormani R, Rousseau-Gueutin M, Julkowska MM, Testerink C, Joubes J, Castroviejo M, Laguerre M, Meyer C, Germain V, Rothan C (2012). A novel class of PTEN protein in Arabidopsis displays unusual phosphoinositide phosphatase activity and efficiently binds phosphatidic acid. Biochem J, 441:161-171. PubMed | DOI

Robaglia C, Thomas M, Meyer C (2012). Sensing nutrient and energy status by SnRK1 and TOR kinases. Curr Opin Plant Biol, 15:301-307. PubMed | DOI

Batailler B, Lemaitre T, Vilaine F, Sanchez C, Renard D, Cayla T, Beneteau J, Dinant S (2012). Soluble and filamentous proteins in Arabidopsis sieve elements. Plant Cell Environ, 35:1258-1273. PubMed | DOI

Castelain M, Le Hir R, Bellini C (2012). The non-DNA-binding bHLH transcription factor PRE3/bHLH135/ATBS1/TMO7 is involved in the regulation of light signaling pathway in Arabidopsis. Physiol Plant, 145:450-460. PubMed | DOI

Gutierrez L, Mongelard G, Flokova K, Pacurar DI, Novák O, Staswick P, Kowalczyk M, Pacurar M, Demailly H, Geiss G, Bellini C (2012). Auxin controls Arabidopsis adventitious root initiation by regulating jasmonic acid homeostasis. Plant Cell, 24:2515-2527. PubMed | DOI

Mounet F, Moing A, Kowalczyk M, Rohrmann J, Petit J, Garcia V, Maucourt M, Yano K, Deborde C, Aoki K, Berges H, Granell A, Fernie AR, Bellini C, Rothan C, Lemaire-Chamley M (2012). Down-regulation of a single auxin efflux transport protein in tomato induces precocious fruit development. J Exp Bot, 63:4901-4917. PubMed | DOI

Pacurar DI, Pacurar ML, Street N, Bussell JD, Pop TI, Gutierrez L, Bellini C (2012). A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions. J Exp Bot, 63:2491-2501. PubMed | DOI

Rigal A, Yordanov YS, Perrone I, Karlberg A, Tisserant E, Bellini C, Busov VB, Martin F, Kohler A, Bhalerao R, Legué V (2012). The AINTEGUMENTA LIKE1 homeotic transcription factor PtAIL1 controls the formation of adventitious root primordia in poplar. Plant Physiol, 160:1996-2006. PubMed | DOI

Arc E, Chibani K, Grappin P, Jullien M, Godin B, Cueff G, Valot B, Balliau T, Job D, Rajjou L (2012). Cold stratification and exogenous nitrates entail similar functional proteome adjustments during Arabidopsis seed dormancy release. J Proteome Res, 11:5418-5432. PubMed | DOI

Frey A, Effroy D, Lefebvre V, Seo M, Perreau F, Berger A, Séchet J, To A, North HM, Marion-Poll A (2012). Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members. Plant J, 70:501-512. PubMed | DOI

Galland M, Job D, Rajjou L (2012). The seed proteome web portal. Front Plant Sci, 3:98. PubMed | DOI

Pochon S, Terrasson E, Guillemette T, Iacomi-Vasilescu B, Georgeault S, Juchaux M, Berruyer R, Debeaujon I, Simoneau P, Campion C (2012). The Arabidopsis thaliana-Alternaria brassicicola pathosystem: A model interaction for investigating seed transmission of necrotrophic fungi. Plant Methods, 8:16. PubMed | DOI

Rajjou L, Duval M, Gallardo K, Catusse J, Bally J, Job C, Job D (2012). Seed germination and vigor. Annu Rev Plant Biol, 63:507-533. PubMed | DOI

Barriere Y, Méchin V, Lefevre B, Maltese S (2012). QTLs for agronomic and cell wall traits in a maize RIL progeny derived from a cross between an old Minnesota13 line and a modern Iodent line. Theor Appl Genet, 125:531-549. PubMed | DOI

Chavigneau H, Goué N, Delaunay S, Courtial A, Jouanin L, Reymond M, Méchin V, Barriere Y (2012). QTL for floral stem lignin content and degradability in three recombinant inbred line (RIL) progenies of <i>Arabidopsis thaliana</i> and search for candidate genes involved in cell wall biosynthesis and degradability. Open Journal of Genetics, 02:7-30. PubMed | DOI

Courtial A, Jourda C, Arribat S, Huguet S, Reymond M, Grima-Pettenati J, Barriere Y (2012). Comparative expression of cell wall related genes in four maize RILs and one parental line of variable lignin content and cell wall degradability. Maydica, 57:56-74. PubMed | DOI

Richet N, Tozo K, Afif D, Banvoy J, Legay S, Dizengremel P, Cabane M (2012). The response to daylight or continuous ozone of phenylpropanoid and lignin biosynthesis pathways in poplar differs between leaves and wood. Planta, 236:727-737. PubMed | DOI

Arkoun M, Jannin L, Laine P, Etienne P, Masclaux-Daubresse C, Citerne S, Garnica M, Garcia-Mina JM, Yvin JC, Ourry A (2012). A physiological and molecular study of the effects of nickel deficiency and phenylphosphorodiamidate (PPD) application on urea metabolism in oilseed rape (Brassica napus L.). Plant and Soil, 362:79-92. PubMed | DOI

Chardon F, Noel V, Masclaux-Daubresse C (2012). Exploring NUE in crops and in Arabidopsis ideotypes to improve yield and seed quality. J Exp Bot, 63:3401-3412. PubMed | DOI

Guiboileau A, Masclaux-Daubresse C (2012). [Autophagic processes in plants: mechanisms, regulation and function]. C R Biol, 335:375-388. PubMed | DOI

Guiboileau A, Yoshimoto K, Soulay F, Bataille MP, Avice JC, Masclaux-Daubresse C (2012). Autophagy machinery controls nitrogen remobilization at the whole-plant level under both limiting and ample nitrate conditions in Arabidopsis. New Phytol, 194:732-740. PubMed | DOI

Yoshimoto K (2012). Beginning to understand autophagy, an intracellular self-degradation system in plants. Plant Cell Physiol, 53:1355-1365. PubMed | DOI

Allais F, Lancelot A, Pion F, Mazeau K, Méry S, Ducrot P (2011). Synthesis, molecular modeling and characterization of new polyphenolic dendronized polymers via ROMP. Polymer Preprints, 52:379. PubMed | DOI

Barakate A, Stephens J, Goldie A, Hunter WN, Marshall D, Hancock RD, Lapierre C, Morreel K, Boerjan W, Halpin C (2011). Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco. Plant Cell, 23:4492-4506. PubMed | DOI

Berthet S, Demont-Caulet N, Pollet B, Bidzinski P, Cézard L, Le Bris P, Borrega N, Herve J, Blondet E, Balzergue S, Lapierre C, Jouanin L (2011). Disruption of LACCASE4 and 17 results in tissue-specific alterations to lignification of Arabidopsis thaliana stems. Plant Cell, 23:1124-1137. PubMed | DOI

Bouxin F, Baumberger S, Renault JH, Dole P (2011). Study of a specific lignin model: gamma-oxidation and how it influences the hydrolysis efficiency of alcohol-aldehyde dehydrogenation copolymers. Bioresour Technol, 102:5567-5573. PubMed | DOI

Cottyn B, Kollmann A, Waffo-Teguo P, Ducrot PH (2011). Rationalization and in vitro modeling of the chemical mechanisms of the enzymatic oxidation of phenolic compounds in planta: from flavonols and stilbenoids to lignins. Chemistry, 17:7282-7287. PubMed | DOI

Culhaoglu T, Zheng D, Méchin V, Baumberger S (2011). Adaptation of the Carrez procedure for the purification of ferulic and p-coumaric acids released from lignocellulosic biomass prior to LC/MS analysis. J Chromatogr B Analyt Technol Biomed Life Sci, 879:3017-3022. PubMed | DOI

Ducrot PH, Allais F, Pla T (2011). An Access to Chiral ?-Benzyl-?-butyrolactones and Its Application to the Synthesis of Enantiopure (+)-Secoisolariciresinol, (-)-Secoisolariciresinol, and (-)-Enterolactone. Synthesis, 2011:1456-1464. PubMed | DOI

Heiss-Blanquet S, Zheng D, Lopes Ferreira N, Lapierre C, Baumberger S (2011). Effect of pretreatment and enzymatic hydrolysis of wheat straw on cell wall composition, hydrophobicity and cellulase adsorption. Bioresour Technol, 102:5938-5946. PubMed | DOI

Louaifi A, Guinault A, Domenek S, Ducruet V, Baumberger S (2011). Valorisation of industrial lignon as additive with antioxidiant properties in PLA. Italian Journal of Food Science, 23:142-145. PubMed | DOI

Richet N, Afif D, Huber F, Pollet B, Banvoy J, El Zein R, Lapierre C, Dizengremel P, Perre P, Cabane M (2011). Cellulose and lignin biosynthesis is altered by ozone in wood of hybrid poplar (Populus tremula x alba). J Exp Bot, 62:3575-3586. PubMed | DOI

Tamasloukht B, Wong Quai Lam MS, Martinez Y, Tozo K, Barbier O, Jourda C, Jauneau A, Borderies G, Balzergue S, Renou JP, Huguet S, Martinant JP, Tatout C, Lapierre C, Barriere Y, Goffner D, Pichon M (2011). Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression. J Exp Bot, 62:3837-3848. PubMed | DOI